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model.json
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model.json
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{"class_name": "Functional", "config": {"name": "model", "layers": [{"class_name": "InputLayer", "config": {"batch_input_shape": [null, 1344, 4], "dtype": "float32", "sparse": false, "ragged": false, "name": "sequence"}, "name": "sequence", "inbound_nodes": []}, {"class_name": "StochasticReverseComplement", "config": {"name": "stochastic_reverse_complement", "trainable": true, "dtype": "float32"}, "name": "stochastic_reverse_complement", "inbound_nodes": [[["sequence", 0, 0, {}]]]}, {"class_name": "StochasticShift", "config": {"name": "stochastic_shift", "trainable": true, "dtype": "float32", "shift_max": 3, "pad": "uniform"}, "name": "stochastic_shift", "inbound_nodes": [[["stochastic_reverse_complement", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu", "trainable": true, "dtype": "float32"}, "name": "gelu", "inbound_nodes": [[["stochastic_shift", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d", "trainable": true, "dtype": "float32", "filters": 288, "kernel_size": [17], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d", "inbound_nodes": [[["gelu", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization", "inbound_nodes": [[["conv1d", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d", "trainable": true, "dtype": "float32", "strides": [3], "pool_size": [3], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d", "inbound_nodes": [[["batch_normalization", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_1", "trainable": true, "dtype": "float32"}, "name": "gelu_1", "inbound_nodes": [[["max_pooling1d", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_1", "trainable": true, "dtype": "float32", "filters": 288, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_1", "inbound_nodes": [[["gelu_1", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_1", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_1", "inbound_nodes": [[["conv1d_1", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_1", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_1", "inbound_nodes": [[["batch_normalization_1", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_2", "trainable": true, "dtype": "float32"}, "name": "gelu_2", "inbound_nodes": [[["max_pooling1d_1", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_2", "trainable": true, "dtype": "float32", "filters": 323, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_2", "inbound_nodes": [[["gelu_2", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_2", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_2", "inbound_nodes": [[["conv1d_2", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_2", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_2", "inbound_nodes": [[["batch_normalization_2", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_3", "trainable": true, "dtype": "float32"}, "name": "gelu_3", "inbound_nodes": [[["max_pooling1d_2", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_3", "trainable": true, "dtype": "float32", "filters": 363, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_3", "inbound_nodes": [[["gelu_3", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_3", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_3", "inbound_nodes": [[["conv1d_3", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_3", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_3", "inbound_nodes": [[["batch_normalization_3", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_4", "trainable": true, "dtype": "float32"}, "name": "gelu_4", "inbound_nodes": [[["max_pooling1d_3", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_4", "trainable": true, "dtype": "float32", "filters": 407, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_4", "inbound_nodes": [[["gelu_4", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_4", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_4", "inbound_nodes": [[["conv1d_4", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_4", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_4", "inbound_nodes": [[["batch_normalization_4", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_5", "trainable": true, "dtype": "float32"}, "name": "gelu_5", "inbound_nodes": [[["max_pooling1d_4", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_5", "trainable": true, "dtype": "float32", "filters": 456, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_5", "inbound_nodes": [[["gelu_5", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_5", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_5", "inbound_nodes": [[["conv1d_5", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_5", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_5", "inbound_nodes": [[["batch_normalization_5", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_6", "trainable": true, "dtype": "float32"}, "name": "gelu_6", "inbound_nodes": [[["max_pooling1d_5", 0, 0, {}]]]}, {"class_name": "Conv1D", "config": {"name": "conv1d_6", "trainable": true, "dtype": "float32", "filters": 512, "kernel_size": [5], "strides": [1], "padding": "same", "data_format": "channels_last", "dilation_rate": [1], "groups": 1, "activation": "linear", "use_bias": false, "kernel_initializer": {"class_name": "HeNormal", "config": {"seed": null}}, "bias_initializer": {"class_name": "Zeros", "config": {}}, "kernel_regularizer": {"class_name": "L2", "config": {"l2": 0.0}}, "bias_regularizer": null, "activity_regularizer": null, "kernel_constraint": null, "bias_constraint": null}, "name": "conv1d_6", "inbound_nodes": [[["gelu_6", 0, 0, {}]]]}, {"class_name": "BatchNormalization", "config": {"name": "batch_normalization_6", "trainable": true, "dtype": "float32", "axis": [2], "momentum": 0.9, "epsilon": 0.001, "center": true, "scale": true, "beta_initializer": {"class_name": "Zeros", "config": {}}, "gamma_initializer": {"class_name": "Ones", "config": {}}, "moving_mean_initializer": {"class_name": "Zeros", "config": {}}, "moving_variance_initializer": {"class_name": "Ones", "config": {}}, "beta_regularizer": null, "gamma_regularizer": null, "beta_constraint": null, "gamma_constraint": null}, "name": "batch_normalization_6", "inbound_nodes": [[["conv1d_6", 0, 0, {}]]]}, {"class_name": "MaxPooling1D", "config": {"name": "max_pooling1d_6", "trainable": true, "dtype": "float32", "strides": [2], "pool_size": [2], "padding": "same", "data_format": "channels_last"}, "name": "max_pooling1d_6", "inbound_nodes": [[["batch_normalization_6", 0, 0, {}]]]}, {"class_name": "GELU", "config": {"name": "gelu_7", "trainable": true, "dtype": "float32"}, "name": 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["stochastic_reverse_complement", 0, 1, {}]]]}, {"class_name": "Flatten", "config": {"name": "flatten", "trainable": true, "dtype": "float32", "data_format": "channels_last"}, "name": "flatten", "inbound_nodes": [[["switch_reverse", 0, 0, {}]]]}], "input_layers": [["sequence", 0, 0]], "output_layers": [["flatten", 0, 0]]}, "keras_version": "2.8.0", "backend": "tensorflow"}