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Commits on Sep 13, 2024

• Update igv.js reference to 3.0.5

  jrobinso

  committedSep 13, 2024
  b684d69

Commits on Aug 11, 2024

• update version

  jrobinso

  committedAug 11, 2024
  2f10ec2

• tab vs space indentation issue

  jrobinso

  committedAug 11, 2024
  c6118e8

• recognize "refseq" files. Not perfect, works for files downloaded directly from UCSC and not renamed.

  jrobinso

  committedAug 11, 2024
  c4abdad

• update igv.js version to 3.0.2.

  jrobinso

  committedAug 11, 2024
  c73ee35

• Add utility to change default zoom (#112)

  DevangThakkar

  committedAug 11, 2024
  e01bba0

Commits on Aug 10, 2024

• find defaults to -1 (#115)

  krdav

  committedAug 10, 2024
  eae69dc

Commits on Mar 15, 2024

• translate-sequence-track option (#108)

  ak

  committedMar 15, 2024
  25a94c0

Commits on Feb 8, 2024

• update examples

  jrobinso

  committedFeb 8, 2024
  2eecde7

• Remove order from fusion template table

  jrobinso

  committedFeb 8, 2024
  a1aaaa7

• Check for supported formats when creating tracks, skipping unknown formats. Fixes #102

  jrobinso

  committedFeb 8, 2024
  e1bf8e6

Commits on Dec 23, 2023

• update examples

  jrobinso

  committedDec 23, 2023
  4866fa6

• fix unit tests

  jrobinso

  committedDec 23, 2023
  0a5a60c

Commits on Dec 22, 2023

• update readme and examples

  jrobinso

  committedDec 22, 2023
  0f37352

• Add support for subsampling bam / cram files using samtools

  jrobinso

  committedDec 22, 2023
  9044dc2

• Retain header lines in gff files. Fixes #99

  jrobinso

  committedDec 22, 2023
  a38353b

• Use github pages for examples

  jrobinso

  committedDec 22, 2023
  dc610b4

• move examples to "docs" folder

  jrobinso

  committedDec 22, 2023
  b76a2ba

• Improved support for SVs. See issue #100

  jrobinso

  committedDec 22, 2023
  b81406f

Commits on Sep 22, 2023

• bump version

  jrobinso

  committedSep 22, 2023
  54b52e8

• Insure "fetch" in vcf.py returns a list of variants. Fixes #76

  jrobinso

  committedSep 22, 2023
  5071c03

• Update README.md

  jrobinso

  committedSep 22, 2023
  1be7739

Commits on Sep 16, 2023

• update readme

  jrobinso

  committedSep 16, 2023
  5fbbf6f

• Fix table layout -- horizontal scrollbar not seen unless scrolled vertically to bottom of table

  jrobinso

  committedSep 16, 2023
  00b4ff3

• during colsort put missing values at bottom always (#91)

  

  brianjohnhaas

  and

  jrobinso

  committedSep 16, 2023
  bdab624

Commits on Sep 1, 2023

• Add "--fasta" argument to replace positional "fasta" argument.

  jrobinso

  committedSep 1, 2023
  dcec933

• fix bug in tsv header being retained as data row (#89)

  jethror1

  committedSep 1, 2023
  14d3418

Commits on Jul 28, 2023

• update examples and bump version

  jrobinso

  committedJul 28, 2023
  0ac3ade

• Support --fasta flag for symmmetry with --genome flag

  jrobinso

  committedJul 28, 2023
  ea99b07

• Support paths relative to track config file.

  jrobinso

  committedJul 28, 2023
  71b3ed6

• fix minor issue with fusion_template -- initial view was slightly zoomed in

  jrobinso

  committedJul 28, 2023
  050580b

Commits on Jul 22, 2023

• support regions-of-interest

  jrobinso

  committedJul 22, 2023
  31f93c6

• Add CTAT (Trinity) fusions example

  jrobinso

  committedJul 22, 2023
  a63db3a

Commits on Jul 21, 2023

• Noembed (#85)

  jrobinso

  committedJul 21, 2023
  98505c5

• Fusions (#84)

  jrobinso

  committedJul 21, 2023
  0340fbe

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