Our lab is located at the Institute for Systems Biology in Seattle, Washigton. We are interested in the ecology, evolution, and emergent function of host-microbial systems. The team is led by Dr. Sean Gibbons. Our toolset includes ecological and evolutionary theory, applied math and biostatistics, and computational systems biology. Most of our work is within the computational domain, but we occaisionally run our own experiments. Our fundamental aim is to discover and formalize the biological rule sets governing host-microbe systems, and apply these rules to engineer microbial ecoystems to improve human and environmental health.
Gibbons Lab
The Gibbons Lab -- Microbes + Ecology + Medicine @ the Institute for Systems Biology.
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- isb_course_2024 Public
Gibbons-Lab/isb_course_2024’s past year of commit activity - JPJ_Frailty_Analysis Public
Johannes JM's Analysis: Multi-omic associations between age, frailty, the gut microbiome, and the human blood plasma metabolome/proteome using the Arivale cohort.
Gibbons-Lab/JPJ_Frailty_Analysis’s past year of commit activity - cdiff_invasion Public
Gibbons-Lab/cdiff_invasion’s past year of commit activity - Aberrant-BMF-Cell-Reports Public
Aberrant bowel movement frequencies coincide with increased microbe-derived blood metabolites associated with reduced organ function.
Gibbons-Lab/Aberrant-BMF-Cell-Reports’s past year of commit activity - 2023_cdiff_venturelli Public
Data and code for the collab with the Venturelli lab studying C. difficile strains.
Gibbons-Lab/2023_cdiff_venturelli’s past year of commit activity - scfa_predictions Public
Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
Gibbons-Lab/scfa_predictions’s past year of commit activity
