Trinity RNA-Seq de novo transcriptome assembly

⚡ ♒ Rapid prokaryotic genome annotation

Automatically exported from code.google.com/p/cdhit

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Rapid large-scale prokaryote pan genome analysis

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

De-Novo Repeat Discovery Tool

A minimap2 frontend for PacBio native data formats

🌳 Create a tree using Mash distances

Biopieces is a bioinformatic framework of tools easily used and easily created.

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

source code for EVM

⛓ Long Interval Nucleotide K-mer Scaffolder

PacBio hybrid error correction through iterative short read consensus

Repository for the Plant Ontology

Graph-based mapping of long sequences, noisy or HiFi.

Pipeline for analysing intergenic regions in bacteria

Algorithms to compute DNA complexity

Detection of Circular RNA and Fusions from RNA-Seq

The final version 2 release of our software to detect core genes in eukaryotic genomes

🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

source code for HpcGridRunner

profile the repeat landscape in a genome

Copy number estimation of highly duplicated sequences

POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes