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Commits on Feb 7, 2021

• option to print errors only

  lh3

  committedFeb 7, 2021
  194b457

• evaluate large-scale misjoins

  lh3

  committedFeb 7, 2021
  75c8933

Commits on Jan 29, 2021

• print number of errors on each read

  lh3

  committedJan 29, 2021
  1025993

Commits on Jan 14, 2021

• added a command for simple VCF statistics

  lh3

  committedJan 14, 2021
  a3253d1

Commits on Nov 15, 2020

• Merge remote-tracking branch 'origin/master'

  lh3

  committedNov 15, 2020
  2da649d

Commits on Aug 21, 2020

• added --mask-len for lh3#659

  lh3

  committedAug 21, 2020
  f995f55

Commits on Jun 12, 2020

• Initialize r->p if ez->zdropped

  

  armintoepfer

  authored and

  lh3

  committedJun 12, 2020
  c9874e2

Commits on Apr 26, 2020

• added a new Makefile for simde

  lh3

  committedApr 26, 2020
  ccb0f7b

Commits on Apr 22, 2020

• changed preprocessor conditionals for SIMDe

  mbrcic

  committedApr 22, 2020
  66db9da

Commits on Apr 21, 2020

• fix for Neon after test.

  mbrcic

  committedApr 21, 2020
  2b3403f

Commits on Apr 20, 2020

• Added documentation entry for added functionality, simde and no_simd.

  mbrcic

  committedApr 20, 2020
  3e16e4e

• SIMDe made optional. Include paths changes for SIMDe.

  mbrcic

  committedApr 20, 2020
  f47e8a5

• fix for Neon

  mbrcic

  committedApr 20, 2020
  c172df7

• Changed sse2neon with SIMDe. Added building non-SIMD version.

  mbrcic

  committedApr 20, 2020
  9e6fdd3

Commits on Apr 14, 2020

• r982: more accurate sum; output errors

  lh3

  committedApr 14, 2020
  29f67a1

• Merge remote-tracking branch 'refs/remotes/origin/master'

  lh3

  committedApr 14, 2020
  adde608

• r981: asmgene to check duplicate genes

  lh3

  committedApr 14, 2020
  f10dff7

Commits on Apr 13, 2020

• travis: added arm64 test.

  

  junaruga

  authored and

  lh3

  committedApr 13, 2020
  d97bba9

Commits on Apr 11, 2020

• r980: support auNGA

  lh3

  committedApr 11, 2020
  5077536

Commits on Apr 6, 2020

• r979: fixed asmgene wrong report. Resolves lh3#581.

  lh3

  committedApr 6, 2020
  0a5e386

Commits on Mar 22, 2020

• Merge branch 'master' of github.com:lh3/minimap2

  lh3

  committedMar 22, 2020
  cb56fb7

• r975: asmstat without CIGAR/NM

  lh3

  committedMar 22, 2020
  e2451e4

Commits on Mar 2, 2020

• remove second definition of kstring

  

  jts

  authored and

  lh3

  committedMar 2, 2020
  d2de282

Commits on Feb 28, 2020

• change kstring_t integer storage size

  

  jts

  authored and

  lh3

  committedFeb 28, 2020
  48cb80e

Commits on Jan 21, 2020

• r974: more informative msg on wrong FASTQ records

  lh3

  committedJan 21, 2020
  6a4b9f9

• r973: fixed compiling errors caused

  lh3

  committedJan 21, 2020
  a7a01fe

• r972: renamed --alt-diff to --alt-drop

  lh3

  committedJan 21, 2020
  9dceae5

• Merge branch 'master' into alt

  lh3

  committedJan 21, 2020
  20a3987

• support ALT mapping

  lh3

  committedJan 21, 2020
  eb3ed69

• r972: fixed negative de:f caused by ambiguous base

  lh3

  committedJan 21, 2020
  7996f04

Commits on Jan 18, 2020

• r968: allow large mini_batch; resolves lh3#491

  lh3

  committedJan 18, 2020
  d2e1470

• r967: no duplicated @sq lines with --split-prefix

  lh3

  committedJan 18, 2020
  24f50f3

• r966: minimap2 returns 1 on file failure (lh3#532)

  lh3

  committedJan 18, 2020
  04e015d

• r965: added --chain-gap-scale for lh3#540

  lh3

  committedJan 18, 2020
  040f741

Commits on Jan 7, 2020

• r963: --junc-bonus not working; resolves lh3#513

  lh3

  committedJan 7, 2020
  cdb7857

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