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Commits on Oct 30, 2023

• r1182: improved paftools.js compatibility

  lh3

  committedOct 30, 2023
  bc588c0

• reverted to the previous paftools.js

  lh3

  committedOct 30, 2023
  ab71702

Commits on Oct 28, 2023

• r1180: paftools.js call compatibility with k8-1.0

  lh3

  committedOct 28, 2023
  9506e7a

Commits on Oct 24, 2023

• Merge remote-tracking branch 'remotes/origin/master'

  lh3

  committedOct 24, 2023
  ce03fbc

• document --secondary-seq in manpage

  lh3

  committedOct 24, 2023
  98a3aa1

• Add bw_long option to mappy's Aligner class (lh3#1124)

  Donaim

  committedOct 24, 2023
  ae05f84

Commits on Jun 4, 2023

• Illumina Complete Long Read presets (lh3#1069)

  koadman

  committedJun 4, 2023
  ace990c

Commits on Apr 29, 2023

• Release minimap2-2.26 (r1175)

  lh3

  committedApr 29, 2023
  e28a55b

• Revert lh3#868 and use the old setup.py

  lh3

  committedApr 29, 2023
  f8d46a7

Commits on Apr 25, 2023

• Release minimap2-2.25 (r1173)

  lh3

  committedApr 25, 2023
  4483f89

• added -ldl for asan on some linux

  lh3

  committedApr 25, 2023
  f1b3c7a

Commits on Apr 21, 2023

• r1171: add operator priority explicit with ()

  lh3

  committedApr 21, 2023
  180faa3

• An option to output SEQ field for secondary alignment (lh3#687)

  

  mikolmogorov

  and

  lh3

  committedApr 21, 2023
  704fbc6

• r1169: improved kexpand compatibility

  lh3

  committedApr 21, 2023
  fc24c8a

• use updated kalloc macros (lh3#1051)

  iiSeymour

  committedApr 21, 2023
  e68d868

Commits on Apr 20, 2023

• mappy check index flags before mapping

  

  alexomics

  authored and

  lh3

  committedApr 20, 2023
  c3d461e

• r1166: sync kalloc with miniwfa and miniprot

  lh3

  committedApr 20, 2023
  c41518a

• make mm_tbuf_t public

  

  iiSeymour

  authored and

  lh3

  committedApr 20, 2023
  819d843

Commits on Apr 8, 2023

• r1164: changed the syntax of -J

  lh3

  committedApr 8, 2023
  5e72423

Commits on Apr 7, 2023

• r1163: increased the default -I to 8G

  lh3

  committedApr 7, 2023
  a026c69

• r1162: fixed a typo; also increased splice pen

  lh3

  committedApr 7, 2023
  ea2042a

• r1161: merged the simple and complex models

  lh3

  committedApr 7, 2023
  1834b1f

• r1160: splice model code cleanup

  lh3

  committedApr 7, 2023
  7ced0f1

• Merge branch 'master' into splice-model

  lh3

  committedApr 7, 2023
  35732f3

• Fixed alignment result final update when computing the exact max value

  

  albertozeni

  authored and

  lh3

  committedApr 7, 2023
  a6fab11

Commits on Mar 17, 2023

• move MM_VERSION define to minimap.h

  

  iiSeymour

  authored and

  lh3

  committedMar 17, 2023
  6ce0dd8

Commits on Feb 14, 2023

• Add HD header ilne to SAM output

  

  nh13

  authored and

  lh3

  committedFeb 14, 2023
  1d3c3ee

Commits on Jan 17, 2023

• r1155: fixed a bug on parsing --rmq

  lh3

  committedJan 17, 2023
  01b98e8

Commits on Jan 6, 2023

• removed debugging code

  lh3

  committedJan 6, 2023
  16b8d50

Commits on Nov 30, 2022

• fixed a wrong comment. Resolves lh3#997

  lh3

  committedNov 30, 2022
  226fd61

Commits on Nov 2, 2022

• r1152: evaluate base Sn and Sp

  lh3

  committedNov 2, 2022
  822ccd1

• r1151: added exoneval

  lh3

  committedNov 2, 2022
  f67849c

Commits on Oct 22, 2022

• r1150: the prev impl counted one less submer

  lh3

  committedOct 22, 2022
  b0b199f

Commits on Oct 21, 2022

• r1149: implemented random open syncmer

  lh3

  committedOct 21, 2022
  c2f07ff

• removed -b0 (a typo)

  lh3

  committedOct 21, 2022
  cefd0d9

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