RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Config files used to define parameters specific to compute environments at different Institutions

Differential gene expression analysis and pathway analysis of RNAseq data

A single-cell RNAseq pipeline for 10X genomics data