2.9.0

• Add hgvs and dbsnp example inputs
• Provide better example inputs on Single Variant Report
• Improve oc new example-input command to support multiple input types
• Improve submit page text input box UI

2.8.0

• Opt-in collection of local user emails for collecting better usage metrics
• Fix bug that was preventing module panels from displaying on submit page
• Add pandas as a dependency

2.7.3

• Import jobs run in the command line into the gui by clicking the "Import Job" button below the jobs table to add a sqlite file
• Create a github discussion post to suggest new annotators directly from the store tab

2.7.1

• Discuss OpenCRAVAT features and get help by clicking the ? icon in the top bar
• Improve top bar look and feel
• Move button to download database to the report section

2.6.1

• Bioconda is only required if using oc vcfanno
• Add HGVS input example to GUI
• Layout beautification for submit form

2.6.0

• Filter vcf files on Genotype fields and variant call information such as zygosity, VAF, and read depth. Filters can include complex boolean logic, and can be used with annotation data.
• Directly annotate large, many-sample VCFs using oc vcfanno. A new vcf is created with OC_XYZ fields in the INFO column. Efficiently uses many threads to process genome-scale input.
• Python 3.12 compatibility
• View errors affecting specific variants from the jobs table in the GUI
• Fixes to checking for and installing annotator updates from the GUI
• Improved config file handling for converters

2.5.0

• Refactor submit page javascript to use modules
• Add end-to-end testing
• Improve example input files: add more variants, GUI examples contain same variants and cmdline example
• Exceptions in annotator setup no longer prevent other annotators from running
• Jobs in GUI can still be opened after changing path of jobs directory
• Change settings icon to gear from hamburger
• Add link to docs in header (? icon)

2.4.2

• Fix to summary widgets. They will no longer use the last run filter when reloading the job without a filter selected.
• On the submit page, the annotate button is not fixed to the bottom of the page.
• Restrict aiohttp version to <4.0.0 in anticipation of changes to the aiohttp api

2.4.1

• Add annotation for Exon Number and End Position in mapper
• Fix bug that occurred when using oc module install for a module that was already installed

2.3.1

• Fix job database locking issues when quickly refreshing jobs
• Set default temporary file encoding to utf-8
• Put all job databases in WAL journal mode
• Further improve handling of modules with dependencies. Resolve circular dependencies and improve version resolution.
• Allow lowercase ref bases in input files. Cast bases to uppercase in results.
• Add support for filtering on user created notes.
• Remove filtering for certain vcf INFO columns