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Commits on Jul 22, 2022

• Note on not being able to maintain the code anymore

  andreas-wilm

  committedJul 22, 2022
  54281cd

Commits on Jan 6, 2021

• Merge pull request #107 from bkille/approx

  andreas-wilm

  committedJan 6, 2021
  3ce3d3a

• Merge pull request #109 from morinlab/bcftools_pparallel

  andreas-wilm

  committedJan 6, 2021
  3ac8cec

Commits on Dec 24, 2020

• Added --approx-threshold option (off by default)

  

  Andreas Wilm

  committedDec 24, 2020
  007a8ba

Commits on Dec 23, 2020

• Added libgsl to build process and added Bonf corr to approx

  

  Andreas Wilm

  committedDec 23, 2020
  7a6577c

Commits on Dec 22, 2020

• Merge branch 'master' of https://github.com/CSB5/lofreq

  

  Andreas Wilm

  committedDec 22, 2020
  8966e95

• Removed some asserts that will fail for valid reasons

  

  Andreas Wilm

  committedDec 22, 2020
  e55414f

Commits on Dec 21, 2020

• patch non-ACTG reference issue

  rdmorin

  committedDec 21, 2020
  babdcab

Commits on Dec 11, 2020

• Use static gsl library

  bkille

  committedDec 11, 2020
  d41f10d

• change cutoffs

  bkille

  committedDec 11, 2020
  980f537

• add minimum n cutoff

  bkille

  committedDec 11, 2020
  ba49787

• add -O3

  bkille

  committedDec 11, 2020
  b2d2762

Commits on Dec 4, 2020

• fix merging by using bcftools

  rdmorin

  committedDec 4, 2020
  1528ca8

Commits on Nov 29, 2020

• less changes

  bkille

  committedNov 29, 2020
  2a9f83e

• remove rpath. User's will need to ensure that libopenblas.so.0 is in the LD_LIBRARY_PATH

  bkille

  committedNov 29, 2020
  ef128f4

Commits on Oct 16, 2020

• approx benchmark

  bkille

  committedOct 16, 2020
  f6d1bee

• add flags for gsl

  bkille

  committedOct 16, 2020
  40fc133

Commits on Jun 15, 2020

• Minor cleanup in README

  

  Andreas Wilm

  committedJun 15, 2020
  6ef81d7

• version 2.1.5

  

  Andreas Wilm

  committedJun 15, 2020
  8fe42b0

• Merge pull request #95 from jmarshall/info_key_compare

  andreas-wilm

  committedJun 15, 2020
  9ffbd58

Commits on Jun 12, 2020

• Fix vcf_var_has_info_key()'s key comparison

  jmarshall

  committedJun 12, 2020
  d2111d5

• Fixed a tiny just introduced vcf format bug (only relevant to CONSVAR)

  

  Andreas Wilm

  committedJun 12, 2020
  4e06c1c

• Merge branch 'master' of https://github.com/CSB5/lofreq

  

  Andreas Wilm

  committedJun 12, 2020
  8206db2

• Fixed vcf routines with undefined results

  

  Andreas Wilm

  committedJun 12, 2020
  1e44677

Commits on Jan 17, 2020

• Added some comments RE #80

  

  Andreas Wilm

  committedJan 17, 2020
  a4db88e

Commits on Jan 4, 2020

• Added 2.1.4 dist files

  andreas-wilm

  committedJan 4, 2020
  e3af6ff

• Updated Changelog for 2.1.4

  andreas-wilm

  committedJan 4, 2020
  ca0bab0

• Version bump to 2.1.4

  andreas-wilm

  committedJan 4, 2020
  e693b29

Commits on Dec 19, 2019

• Merge pull request #86 from jmarshall/htslib

  andreas-wilm

  committedDec 19, 2019
  01cc9ed

• Minor fixes in parallel caller

  andreas-wilm

  committedDec 19, 2019
  4ef3d95

Commits on Dec 18, 2019

• Using AC_RANLIB instead of LT_INIT

  andreas-wilm

  committedDec 18, 2019
  86a6cbe

Commits on Dec 17, 2019

• Building against a source HTSlib requires HTSlib 1.4 or later

  jmarshall

  committedDec 17, 2019
  c8c1a3d

Commits on Dec 16, 2019

• Update configure's HTSlib detection and remove Samtools detection

  jmarshall

  committedDec 16, 2019
  755f434

• Convert use of legacy samtools API to use HTSlib API instead

  jmarshall

  committedDec 16, 2019
  daad606

Commits on Mar 6, 2018

• Germline option in somatic only produced germline indels

  

  Andreas WILM

  committedMar 6, 2018
  f2c00dc

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