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Load OpenDX files #438
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Thanks for the kind words! It seems that MDAnalysis certainly can read the data format. In theory if MDAnalysis can parse it, then we should have very little trouble using it to bring the data to Blender. I've tried looking at opendx.org and the website doesn't load, so I am not entirely sure what the data format is. If you could link to some example data, and how you would want this example data to be rendered or visualised, then I'm sure we can set something up to import it into Blender via Molecular Nodes. |
Thanks for this reply ! Render example in VMDThe pictureInformation of how it was doneActually done in vmd 1EHE.pdb 2024_02_20_10-07-27_abps.dx Into the representation, two isosurface were drawn at value -1 and 1. Rendering was done using the GUI of VMD. The objective, here, is to display certain properties around the protein, using a The What could be done?Something like VMD, where you import the If you need other information, please do not hesitate to ask! |
Do you have a PDB code that goes with this protein & |
The PDB code should be |
It looks so great! After some discussion with collegues, it seam there are two option when working with isosurface:
I would say 2d case is the best, but if it's working with the 1st one, it is also so cool! Thank you for your dedication into this awsome project! |
Thanks for the extra info @FilouPlains - I'll look into what kind of options I can have for cutoffs. In the image you attached there are two colors on the generated volume mesh - where are those values coming from? I'm assuming you are using some attribute of the volume to choose colors? |
Load OpenDX files
Hi! First of all, thanks a lot for your hard work! This extension and its constant improvement is awesome!
OpenDX (extension .dx) is a grid format that you can visualize using, for instance, VMD or PyMol. I was wondering if it was possible to do something using your Blender extension, to open these files? Currently, what I am manually doing is exporting, using VMD, the obtained grid in a .OBJ and .MTL files. Then I open them into Blender and I align this grid to the protein…
If I am not mistaken, you are using MDAnalysis, which can write and open these formats. But anyway, if it is not doable, there are no problems, due to the particular format.
Thanks again for your hard work!
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